Question: Assign correct bootstrap value
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gravatar for listerr01
2.3 years ago by
listerr010
United States
listerr010 wrote:

I'm a bit confused about whether Node A in the Original Neighbor-joining tree can be considered to have been recovered in the bootstrap replicate tree in the following examples. Can anybody suggest an algorithm for a quick comparison of each bootstrap replicate with the original tree for each node? Note that I am not looking for an existing program, but an algorithm that helps make the comparison programmatically.

Thanks.

Original tree

Bootstrap Replicate

ADD COMMENTlink modified 2.1 years ago by Biostar ♦♦ 20 • written 2.3 years ago by listerr010

Hopefully the new links to Flickr work now. Would appreciate some help about whether Node A in the Original Neighbor-joining tree can be considered to have been recovered in the bootstrap replicate tree. I'm looking for an algorithm for a quick comparison of each bootstrap replicate with the original tree for each node? Note that I am not looking for an existing program, but an algorithm that helps make the comparison programmatically. Thanks.

Link to original (Neighbor-joining) tree: https://www.flickr.com/gp/150972054@N04/99055R Link to bootstrap replicate: https://www.flickr.com/gp/150972054@N04/72006b

ADD REPLYlink modified 2.3 years ago • written 2.3 years ago by listerr010
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