Question: How to access VCF files for Genotype Tissue Expression (GTEx) data
1
gravatar for jparker4
2.9 years ago by
jparker420
jparker420 wrote:

Hello,

I have access to the raw GTEx data and am trying to the download VCF files containing the SNP data for each of the donors within the dataset. However, I cannot find where these files are kept/how to access them. Any help would be much appreciated.

gtex snp vcf • 2.0k views
ADD COMMENTlink modified 2.8 years ago by Tao350 • written 2.9 years ago by jparker420
1
gravatar for Tao
2.8 years ago by
Tao350
Tao350 wrote:

Hi, You might want to be authorized first to access GTEx genotyping data. From the link below, https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000424.v6.p1, there is instructions for requestors. Once you are authorized, you can access via the Authorized Access. The genotyping data were saved under panel of "Phenotype and Genotype files". And the genotyping data is saved in: phg000520.v2.GTEx_MidPoint_Illumina25M.genotype-calls-vcf.c1.GRU.tar

ADD COMMENTlink modified 2.8 years ago • written 2.8 years ago by Tao350
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