Question: Circos and RNA-Seq Data
0
gravatar for obbedio
3.7 years ago by
obbedio0
obbedio0 wrote:

Good evening, my name is Luigi, I’m a PhD Student with the passion of Bioinformatic, and I’m working on several RNA-Seq data. I recently discovered Circos, and I’m publishing my first paper on RNA-Seq. I would like to apply Circos plots in my work, but I didn’t find any tutorial or satisfying guide to generate specific data files of RNA-Seq for Circos, and how to use it… Please, can you explain me how to create a plot from RNA-Seq data, and how to set specific data files to import? In detail, I would like to integrate, in the same plot (if possible): 1) Scatter Plot; 2) Heat Map 3) Volcano Plot 4) Ideograms. Moreover, I have an experiment with 3 replies and 4 time points: can I put all time points data to compare them, following the previous kind of graphics? Thanks very much in advance.

plot rna-seq circos • 1.8k views
ADD COMMENTlink written 3.7 years ago by obbedio0

Did you see http://circos.ca/tutorials/lessons/ ? It's not a quick and easy tool to use, and requires some investment of time...

ADD REPLYlink written 3.7 years ago by Madelaine Gogol5.2k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2235 users visited in the last hour