I have a homology model of a protein. I have to do energy minimization for the same, I have chosen to do this using Avogadro software. My doubt is, should I start "Optimize Geometry under Select menu" or "Auto Optimize tool"? I chose Avogadro because, when I did the same using GROMACS, the protein chains got split and looks totally disrupted. When I tried using ArgusLab to optimize Geometry, I ran like almost 30 steps, still the Geometry did not converge.
Question: Energy minimization using Avogadro
3.5 years ago by
shilpa.janarthanan • 0 wrote:
ADD COMMENT • link •
Please log in to add an answer.
Powered by Biostar version 2.3.0
Traffic: 1578 users visited in the last hour