This question is similar to this post. C: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
I have been using CIBERSORT and DeconRNAseq, but both of them give different results.
Does anyone know of other cell type signatures besides LM22 from CIBERSORT which has only 22 cell types? Signatures that could include fibroblasts etc besides the 22 cells provided in LM22.
Also,are there any other tools for RNAseq besides CIBERSORT and DeconRNAseq?
Are there any softwares which consider other factors into account such as tumor purity before doing deconvolution?