Question: Allele coding BIM and Genotypes in SNPmatrix (0,1,2,3). Coding doubt.
0
gravatar for j.j.stocks
2.5 years ago by
j.j.stocks0
j.j.stocks0 wrote:

Hi, I have the following situation for a SNP:

In the BIM file Contig position A1 A2 3551 58921 C T

Reference is T

In the SNPmatrix it gets coded as 3 when T/T and 1 when C/C, 2 T/C.

Given the reference is T and for individuals that are T/T shouldn't it be coded 1?

Many thanks

ADD COMMENTlink written 2.5 years ago by j.j.stocks0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 503 users visited in the last hour