I've got ChIP-seq data analyzed with MACS and looks at such:
> chr start end length summit tags -10log10(pvalue) fold_enrichment FDR(%) > chr1 9911 10616 706 251 77 60.46 4.07 0.30 > chr1 11119 11740 622 185 32 101.80 10.07 0.13 etc...
How do I now select the relevant peaks according to these scores. I'm looking for a sort of threshold-value for which I can say "Any peak with a score above this value is an actual binding site".
I read the Zhang article already but couldn't find any parameters to use.