Question

How to calculate nucleotide diversity and Tajima for synonymous and non-synonymous sites separately?

1

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7.1 years ago

xueyangg11 ▴ 10

I use Dnasp v.5 to calculate nucleotide diversity and Tajima's D for synonymous and non-synonymous sites separately. However, my samples are over 1000, Dnasp v.5 CANNOT calculate the standard deviation for nucleotide diversity and p value for Tajima's D. How to calculate nucleotide diversity and Tajima for synonymous and non-synonymous sites separately by other software? Thanks!

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ADD COMMENT • link updated 5.5 years ago by Myo Naung ▴ 10 • written 7.1 years ago by xueyangg11 ▴ 10

score 0 · Answer 1 · 2018-11-18

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5.5 years ago

Myo Naung ▴ 10

I'm having the same issue. Did you figure it out ?

ADD COMMENT • link 5.5 years ago by Myo Naung ▴ 10