Question: How to calculate nucleotide diversity and Tajima for synonymous and non-synonymous sites separately?
1
gravatar for xueyangg11
23 months ago by
xueyangg1110
xueyangg1110 wrote:

I use Dnasp v.5 to calculate nucleotide diversity and Tajima's D for synonymous and non-synonymous sites separately. However, my samples are over 1000, Dnasp v.5 CANNOT calculate the standard deviation for nucleotide diversity and p value for Tajima's D. How to calculate nucleotide diversity and Tajima for synonymous and non-synonymous sites separately by other software? Thanks!

gene • 1.4k views
ADD COMMENTlink modified 4 months ago by Myo Naung 10 • written 23 months ago by xueyangg1110
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gravatar for Myo Naung
4 months ago by
Myo Naung 10
Melbourne, WEHI
Myo Naung 10 wrote:

I'm having the same issue. Did you figure it out ?

ADD COMMENTlink written 4 months ago by Myo Naung 10
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