How to calculate nucleotide diversity and Tajima for synonymous and non-synonymous sites separately?
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4.0 years ago
xueyangg11 ▴ 10

I use Dnasp v.5 to calculate nucleotide diversity and Tajima's D for synonymous and non-synonymous sites separately. However, my samples are over 1000, Dnasp v.5 CANNOT calculate the standard deviation for nucleotide diversity and p value for Tajima's D. How to calculate nucleotide diversity and Tajima for synonymous and non-synonymous sites separately by other software? Thanks!

gene • 2.4k views
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2.4 years ago
Myo Naung ▴ 10

I'm having the same issue. Did you figure it out ?

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