htseq-count works for some but not all samples
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8.4 years ago

I'm trying to create my count matrices and I am getting very strange results for two of my samples. They have almost no reads, while the rest look as expected. I'm extremely new to this, and would appreciate some trouble shooting advice. The last observation below is the big concern. https://ibb.co/e51fak

My job output file usually says [bam_sort_core] merging from 14 files...

But for the files that are of concern, it is completely blank.

graph of data

RNA-Seq gene sequencing • 1.1k views
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