Question: Annotating chromatin interactions (interactions generated from HOMER)
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gravatar for s.singh
3.0 years ago by
s.singh20
University of California, United States
s.singh20 wrote:

Hi All,

I am using HOMER to analyse Hi-C data of Hordeum vulgare (Barley). I have computed the significant chromatin interactions and now I want to annotate these interactions. HOMER doesn't have an inbuilt genome of barley in it, so, I am not able to annotate the interactions. I tried using GFF and GTF file, but it is not working.

Can anyone suggest me how to annotate chromatin interactions? Is there any tool available for this?

Thanks Swadha

homer hi-c • 898 views
ADD COMMENTlink modified 3.0 years ago • written 3.0 years ago by s.singh20
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