Question: UniFrac in R with just the OTU table?
0
gravatar for David
6 months ago by
David60
David60 wrote:

Hi, I have an OTU table (not 16S data but WGS data from illumina). This table does not come from qiime. It´s a custom pipeline based on the taxonomy assignment using single copy genes (not 16S markers).

I have build my OTU table i would like to compare samples using unifrac distances for example. I don´t have a tree (neither sequence alignment as i have used single copy genes to derive taxonomy) so i was wondering what would be the best way to proceed if possible ??

Thanks, david

ADD COMMENTlink written 6 months ago by David60
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1055 users visited in the last hour