UniFrac in R with just the OTU table?
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5.1 years ago
David ▴ 210

Hi, I have an OTU table (not 16S data but WGS data from illumina). This table does not come from qiime. It´s a custom pipeline based on the taxonomy assignment using single copy genes (not 16S markers).

I have build my OTU table i would like to compare samples using unifrac distances for example. I don´t have a tree (neither sequence alignment as i have used single copy genes to derive taxonomy) so i was wondering what would be the best way to proceed if possible ??

Thanks, david

R unifrac phylogeny metagenomics • 1.6k views
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