ddRADseq sequencing depth

Question

[jingjin2203]

Hi All,

I am using ddRADseq to genotype a set of individuals. I got my sequencing data back and was wondering how to check the sequencing depth, in other words, I wanted to know how many times each locus was sequenced within each individual? Is there any software or package can do this for me?

Any comments or suggestions are welcome. I'll really appreciate your help.

Thanks, Jing