ABSOLUTE : Plots not generated
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4.5 years ago
hsbinf ▴ 20

Hi, I'm trying to run ABSOLUTE (on segmented file generated from VARSCAN + DNACopy) but I don't seem to be getting plots.

I get this warning while running ABSOLUTE: Warning message: In MakeSegObj(seg.dat.fn, min_probes = min_probes, max_sd = max_sd, : NAs introduced by coercion

And when I check seg.dat[["mode.res"]][["mode.flag"]], I get E_CR_SCALE.

Any idea how to fix it?

Thanks

absolute whole exome sequencing • 1.0k views
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