Question: How to extract specific lines from a MCL dump file
0
gravatar for nancydong20
2.1 years ago by
nancydong2080
nancydong2080 wrote:

Hello everyone!

I have a MCL file where each line is a gene cluster and contains gene IDs belonging to that family. Gene family #1 is in line 1, gene family #2 is in line 2, etc.

I have identified a number of gene families of interest, and want to extract the gene IDs belonging to these families. I have the line numbers in a separate text file. I have looked online for commands/scripts for extracting lines from a file using line numbers stored in another file, but somehow they all only extract the gene IDs belonging to the gene family in the last line number given in the text file. I'm wondering if this is because a MCL dump file behaves differently?

Any help would be greatly appreciated!

dump file mcl • 607 views
ADD COMMENTlink written 2.1 years ago by nancydong2080
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 989 users visited in the last hour