Question: automated SRA annotaion/Accession List
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gravatar for cakesebastian
16 months ago by
cakesebastian0 wrote:

Hello I am studying RNA-seq from SRPs and want to create an automated analyzing-pipeline. I need the annotation per SRR thats for example in the RunInfo Table of the NCBI Trace selector. (e.g. https://trace.ncbi.nlm.nih.gov/Traces/study/?acc=DRP000617 ). It seems to me there is no way of creating a link to that Table as I only have the corresponding SRP and SRR. Does anybody know an automated way to get the annotations?

rna-seq run selector sra ncbi • 542 views
ADD COMMENTlink modified 12 months ago by hh.earlydays0 • written 16 months ago by cakesebastian0
0
gravatar for hh.earlydays
12 months ago by
hh.earlydays0 wrote:

Please see this discussion: How To Get All Runs For A Sample In Sra? In your case, you can use http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?save=efetch&db=sra&rettype=runinfo&term=DRP000617

ADD COMMENTlink modified 12 months ago • written 12 months ago by hh.earlydays0
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