Question: How should I compare multiple TF methylation percentages?
gravatar for morovatunc
3.8 years ago by
morovatunc470 wrote:


I would like to compare methylation percentage of multiple transcription factors. I have seen many differential methylation region analysis based on multiple samples but has any of you done this kind of analysis based on single sample and different subset of regions ?

My aim is to score every region of a bed file regarding its methylation percentage. So that I can get cumulative scores of that TF and make comparison.

  • For any given peak of a bed file how should I score methylation ?
  • Because methylation data is bimodal a simple box plot is looking very bad. Do you have a suggestion to show differences among TF binding regions methylation profile ?

I am very frasturated so any guidenence is very valuable,



tf methylation encode • 869 views
ADD COMMENTlink modified 3.8 years ago • written 3.8 years ago by morovatunc470
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