Retrieving SRA datasets for completed bacterial genomes
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7.1 years ago
ThePresident ▴ 180

I would like to retrieve sequencing datasets from SRA database for a set of completely sequenced and finished bacterial genomes. For example, according to NCBI there are 10 Bordetella hinzii sequenced genomes but only two of them have their genome finished/fully sequenced. So I would like to retrieve any sequencing data (ideally with some criteria such as Illumina platform, paired-end etc.) for these two genomes only.

In this case, it's simple to individually download these two genomes, but for some other species, the number of finished genomes can be very high and not all of them have SRA datasets.

Thank you

SRA NCBI • 1.3k views

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