Question: Error: MPHF is not injective in Minia
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gravatar for k.e.cadorna
2.2 years ago by
k.e.cadorna0 wrote:

We're trying to use Minia in assembling the tiger shrimp genome sequenced using the Illumina HiSeq platform. We had encountered an error on running the assembly with our dataset saying "MPHF is not injective". What would be the problem with this error?

error minia mphf assembly genome • 714 views
ADD COMMENTlink modified 2.1 years ago by Rayan Chikhi1.4k • written 2.2 years ago by k.e.cadorna0
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gravatar for Rayan Chikhi
2.1 years ago by
Rayan Chikhi1.4k
France, Lille, CNRS
Rayan Chikhi1.4k wrote:

This was resolved through an email discussion. A possible fix is to use the "-max-memory 5000", but I believe that the problem is being fixed in by using more recent version of Minia (https://github.com/GATB/minia).

ADD COMMENTlink written 2.1 years ago by Rayan Chikhi1.4k
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