Question: Error: MPHF is not injective in Minia
0
gravatar for k.e.cadorna
12 weeks ago by
k.e.cadorna0 wrote:

We're trying to use Minia in assembling the tiger shrimp genome sequenced using the Illumina HiSeq platform. We had encountered an error on running the assembly with our dataset saying "MPHF is not injective". What would be the problem with this error?

error minia mphf assembly genome • 219 views
ADD COMMENTlink modified 20 days ago by Rayan Chikhi1.2k • written 12 weeks ago by k.e.cadorna0
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gravatar for Rayan Chikhi
20 days ago by
Rayan Chikhi1.2k
France, Lille, CNRS
Rayan Chikhi1.2k wrote:

This was resolved through an email discussion. A possible fix is to use the "-max-memory 5000", but I believe that the problem is being fixed in by using more recent version of Minia (https://github.com/GATB/minia).

ADD COMMENTlink written 20 days ago by Rayan Chikhi1.2k
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