Question: Assemble genomes over 100 Mb with the portal SMRT Analysis Software v4.0
0
gravatar for gabri
22 months ago by
gabri50
gabri50 wrote:

Hi all!

I have a dataset of PacBio sequences and I'm testing different de novo assembly software. Now I would like to try the SMRT Analysis Software and its portal. The latest version available today (June 2017) is the 4.0.

Is it possible to assemble genomes greater than 100 Mb with the version 4.0 using the portal?

The manual of the version 4.0 does not seem to indicate this kind of limitation, but I would like to have confirmation from some users that are using this version before installing the program.

Thanking in advance for your help!

ADD COMMENTlink modified 21 months ago by shwethacm200 • written 22 months ago by gabri50
1
gravatar for shwethacm
21 months ago by
shwethacm200
Seattle, WA
shwethacm200 wrote:

Do you mean SMRT Link 4.0? Check what assembler it is running. If it is Falcon, then for sure, you can assemble genomes >100Mb.

ADD COMMENTlink written 21 months ago by shwethacm200

Ok I'll check, thank you for the answer!

ADD REPLYlink written 21 months ago by gabri50
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