Question: Inserting k-mers into existing Graph with GATB
gravatar for TK
7 months ago by
TK0 wrote:


I was wondering if it is possible to insert further k-mers into an existing de Bruijn Graph with GATB-core? I'd like to add another sequence into a graph by iterating over the k-mers and add them to an existing graph. Is such a functionality realized yet? If so, can one re-trigger the tip/bulge removal?

Best, TK

gatb • 292 views
ADD COMMENTlink modified 6 months ago by pierre.peterlongo710 • written 7 months ago by TK0
gravatar for pierre.peterlongo
6 months ago by
pierre.peterlongo710 wrote:

Hi there,

This functionality is not realized and not adapted to the minia data structure, designed to the indexation of a fixed kmer set.

ADD COMMENTlink written 6 months ago by pierre.peterlongo710
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 694 users visited in the last hour