Question: Inserting k-mers into existing Graph with GATB
gravatar for TK
10 months ago by
TK0 wrote:


I was wondering if it is possible to insert further k-mers into an existing de Bruijn Graph with GATB-core? I'd like to add another sequence into a graph by iterating over the k-mers and add them to an existing graph. Is such a functionality realized yet? If so, can one re-trigger the tip/bulge removal?

Best, TK

gatb • 338 views
ADD COMMENTlink modified 9 months ago by pierre.peterlongo820 • written 10 months ago by TK0
gravatar for pierre.peterlongo
9 months ago by
pierre.peterlongo820 wrote:

Hi there,

This functionality is not realized and not adapted to the minia data structure, designed to the indexation of a fixed kmer set.

ADD COMMENTlink written 9 months ago by pierre.peterlongo820
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