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• Build Graph lost k-mers
  I have a FASTA file contains unique k-mers with the read length is the k-mer size: >kmer_1 A...
• GATB de Bruijn graph
  Hi,   First, thank you for developing the excellent looking GATB library.  I'm excited to use it...
• confusion in the DeBruijn Graph
  hello, in the DeBruijn Graph the nodes(vertices) are le k-mer or the (k-1)mer?? there are works w...
• GATB will provide developer support via Biostar
  The Genome Assembly & Analysis Tool Box (GATB) provides an easy way to develop efficient and ...
• GATB - Bloom filter for k-mers
  Hello, I would like to use the GATB library for creating a Bloom filter for k-mers. Please, coul...
• velvet user manual - node lengths????
      In the user manual of velvet, http://www.ebi.ac.uk/~zerbino/velvet/Manual.pdf, there is a s...
• DSK error on k-mer lengths up to, say, 160
  I am looking for a k-mer analysis tool that is capable of analysing kmers longer then 31. I thoug...
• gap size between k-mer pairs
  Hi, I've been trying to run ABySS on PE data (~90GB) from a plant genomic sample with a k-mer si...
• New version of the GATB library
  The new version of the GATB-CORE library 1.0.6 is now available. This version provides :  spe...
• K-Mer Correction In Rna-Seq Data For Transcriptome Assembly?
  In whole-genome high-throughput sequencing data, one expects a clear separation between high-freq...
• K-mer counter tool should write k-mers occurring only once to the output file?
  Dear Members, I would like to know that Are k-mers whose occurrence is only 1(one) have any purp...
• Kmergenie k-mer estimate and multiple k-mers
  Hi, (a) According to what I read, kmergenie do not recommend to us the single k-mer estimate for...
• why FastQC tool K-mer content parameter is absent?
  Hi I used fastqc tool after running Afterqc tool but at the result I saw k-mer content parameter ...