Question: Inserting k-mers into existing Graph with GATB
0
gravatar for TK
14 months ago by
TK0
Berlin
TK0 wrote:

Hi,

I was wondering if it is possible to insert further k-mers into an existing de Bruijn Graph with GATB-core? I'd like to add another sequence into a graph by iterating over the k-mers and add them to an existing graph. Is such a functionality realized yet? If so, can one re-trigger the tip/bulge removal?

Best, TK

gatb • 400 views
ADD COMMENTlink modified 13 months ago by pierre.peterlongo830 • written 14 months ago by TK0
0
gravatar for pierre.peterlongo
13 months ago by
France
pierre.peterlongo830 wrote:

Hi there,

This functionality is not realized and not adapted to the minia data structure, designed to the indexation of a fixed kmer set.

ADD COMMENTlink written 13 months ago by pierre.peterlongo830
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