Question: KisSplice output for SNPs type 0a - for are the identifiers Q1_.. Q2_.. Qn_..
0
gravatar for thuemmler
15 months ago by
thuemmler0
thuemmler0 wrote:

Dear KisSpilce users, I have successfully performed a KisSplice run with a set of 4 fastq files. Only the resulting fasta file with the type_0a SNPs contains Q1_.. Q2_.. Q3_.. Q4_.. specification. The identifiers are not explained in the manual. What is the meaning of the Qn identifiers? Thanks!

kissplice • 475 views
ADD COMMENTlink modified 13 months ago by vincent.lacroix80 • written 15 months ago by thuemmler0
0
gravatar for vincent.lacroix
13 months ago by
vincent.lacroix80 wrote:

Dear user, I am sorry for the slow reply. Indeed, the user guide does not explain this point. We should include this in the next version. Q1_.. Q2_.. Q3_.. Q4_.. correspond to the average quality of the bases covering the SNP in your data. If the average quality is low, then it is likely that your type_0a bubble is not a true SNP, but a sequencing error. Best regards, Vincent

ADD COMMENTlink written 13 months ago by vincent.lacroix80
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1828 users visited in the last hour