Question: KisSplice output for SNPs type 0a - for are the identifiers Q1_.. Q2_.. Qn_..
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3.1 years ago by
thuemmler0 wrote:

Dear KisSpilce users, I have successfully performed a KisSplice run with a set of 4 fastq files. Only the resulting fasta file with the type_0a SNPs contains Q1_.. Q2_.. Q3_.. Q4_.. specification. The identifiers are not explained in the manual. What is the meaning of the Qn identifiers? Thanks!

kissplice • 1.0k views
ADD COMMENTlink modified 2.9 years ago by vincent.lacroix130 • written 3.1 years ago by thuemmler0
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2.9 years ago by
vincent.lacroix130 wrote:

Dear user, I am sorry for the slow reply. Indeed, the user guide does not explain this point. We should include this in the next version. Q1_.. Q2_.. Q3_.. Q4_.. correspond to the average quality of the bases covering the SNP in your data. If the average quality is low, then it is likely that your type_0a bubble is not a true SNP, but a sequencing error. Best regards, Vincent

ADD COMMENTlink written 2.9 years ago by vincent.lacroix130
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