Entering edit mode
6.7 years ago
I0110
▴
140
Hi,
I have a bed file with.
column 1: chromosome number
column 2: exon start
column 3: exon stop
column 4: gene name
column 5: start of coding sequence (CDS)
column 6: end of coding sequence (CDS)
column 7: strand
See below for example.
Is there a way to transform it to gtf/gff format? Thank you!
1 3760 3913 S1G01010.1 130 1417 +
1 3995 4276 S1G01010.1 130 1417 +
1 4485 4605 S1G01010.1 130 1417 +
1 4705 5095 S1G01010.1 130 1417 +
1 5173 5326 S1G01010.1 130 1417 +
1 5438 5629 S1G01010.1 130 1417 +
1 6917 7069 S1G01020.1 465 1200 -
1 6917 7069 S1G01020.3 583 1291 -
1 6917 7069 S1G01020.5 583 1177 -
1 7156 7232 S1G01020.1 465 1200 -
1 7156 7232 S1G01020.3 583 1291 -
1 7156 7232 S1G01020.5 583 1177 -
1 7317 7450 S1G01020.2 72 645 -
1 7317 7450 S1G01020.6 190 502 -
1 7383 7450 S1G01020.1 465 1200 -
1 7383 7450 S1G01020.3 583 1291 -
1 7383 7450 S1G01020.5 583 1177 -
1 7563 7649 S1G01020.1 465 1200 -
1 7563 7649 S1G01020.2 72 645 -
1 7563 7649 S1G01020.3 583 1291 -
1 7563 7649 S1G01020.5 583 1177 -
1 7563 7649 S1G01020.6 190 502 -
1 7761 7835 S1G01020.1 465 1200 -
1 7761 7835 S1G01020.2 72 645 -
1 7761 7835 S1G01020.3 583 1291 -
1 7761 7835 S1G01020.5 583 1177 -
1 7941 7987 S1G01020.1 465 1200 -
1 7941 7987 S1G01020.2 72 645 -
1 7941 7987 S1G01020.3 583 1291 -
1 7941 7987 S1G01020.5 583 1177 -
1 8235 8325 S1G01020.1 465 1200 -
1 8235 8325 S1G01020.2 72 645 -
1 8235 8325 S1G01020.5 583 1177 -
1 8235 8325 S1G01020.6 190 502 -
1 8235 8441 S1G01020.3 583 1291 -
1 8416 8418 S1G01020.5 583 1177 -
1 8416 8418 S1G01020.6 190 502 -
1 8416 8464 S1G01020.1 465 1200 -
1 8416 8464 S1G01020.2 72 645 -
1 8570 8665 S1G01020.1 465 1200 -
1 8570 8665 S1G01020.2 72 645 -
