Question: Variant calling and anotation in h pylori
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gravatar for j.roch.lach
3.1 years ago by
j.roch.lach0 wrote:

Hello,

I'v got three sequences of genomes (h. pylori wild type, h. pylori mutant with single nucleotide mutation and h. pylori with big deletion (it's exception after experiment)) . I want to call variants and annotate them with amino acids changes. I try to use for these CLC workbench and mapping reads from mutants to de novo assembled wild type genome but i can't add annotation. I annotate the wild type genome with RAST.

Thank you for help!

snp sequence genome • 683 views
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