How to make substitution matrix?
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6.7 years ago

Hi all,

 I have several sets of multiple sequence alignment, and I want to use all these sets to build a substitution matrix. 
 Could someone suggest me a easy to use R package or binary app?
 Thanks!
alignment substitution_matrix • 1.8k views
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Entering edit mode
6.7 years ago
kloetzl ★ 1.1k

Depending on your file formats and definition of substitution matrix, maf2dist might do the trick.

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