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• RepeatMasker Library Help
  Hi, I'm looking to install RepeatMasker for use with the Maker and/or RepeatModeler programs. I ...
• Repeatmodeler/Repeatmasker Error
  Hi, I'm trying to use RepeatModeler in the de novo identification of repeats in a newly-sequenced...
• RepeatMasker - differing results - help!
  Hi all I have an issue with repeatmasker that I can't figure out. When I perform two repeatmaske...
• Solved: RepeatMasker Output disappears - no output
  Hi! I have a problem with RepeatMasker that has been mentioned before here: https://www.biostars....
• Differences Between Ucsc And Local Repeatmasker Results
  Hello, Im trying to reproduce some results observed at UCSC genome browser on repeats. I was car...
• ReapeatMasker only uses E. coli insertion elements
  Hi, I used RepeatMasker with different species, but it always only compared to E. coli insertion ...
• Missing or disappearing output RepeatMasker
  I have received this message recently while using makeblastdb for rmblast in RepeatMasker, and it...
• Error Invoking Makeblastdb
  I installed repeat masker and the necessary components on my system with Biolinux6.0. However whe...
• RepeatMasker command not found. Bad perl interpreter
  Hi, I am trying to use RepeatMasker to create a GTF file of transposable elements (specifically...
• RepeatMasker Results Visualization
  How can I visualize RepeatMasker output? What Python code in Jupyter Notebook I should use? Thanks.
• biopython format_alignment gives incorrect output when submit job to the cluster
  Dear all, I try to call mutations comparing one contig to the reference sequence using pairwise a...
• Errors While Running Repeatmasker
  I tried to run RepeatMasker to remove low complexity reads from my query data GC_40_2W.fa But sad...
• error invoking makeblastdb
  I was using the software repeatmasker setting a `-species` for my analysis. when I run the comman...
• Why can't I get classification when I use a custom TE library
  Dear all, Recently, I used RepeatMasker to annotate a transcriptome. In fact, I want to use a c...
• guidance for communication online seach engine with python or R script?
  Hi guys, I'm looking for some python packages or R packages to communicate repeatMasker online s...
• A Question About Repeatmasker'S Parameters
  The nature article Draft genome of the wheat A-genome progenitor Triticum urartu use the RepeatM...
• Ucsc Table Track Choice For Transposons
  I'm running some program which requires: RepeatMasker output, with "satellite" only, and conver...
• is it ok to make changes to a DESEq2 object?
  In DESEq2 is it ok to remove samples or genes from a DESeqDataSet object or do I need to re-build...
• Hidden Markov Models Within Sequence Analysis -- Dispelling Misconceptions + Fixing Explanations
  So I've read a few threads on here... and it seems that there are quite a few questions about wha...