Question: Recode SNPs dataset to Number
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lailan.sahrina.hsb • 0 wrote:
Dear All,
How do I recode SNPs dataset based on major allele, minor allele and heterozygote while W, N, Y nucleotide code were within the data? Usually, SNPs codes like AA, AG, AA, AA, AT, AA, GG, GG, AA, GG, AA, AA will be recoded to 0, 1, 0, 0, 1, 0, 2, 2, 0, 2, 0, 0 because A is major allele while G is minor allele. What about if I have SNPs codes like T, T, T, W, N, A, T, T, W? Previously, I used recodeSNPs function from Scrime package in R to do it. Unfortunately, it does not work for this data
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modified 3.3 years ago
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pfs • 280
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3.3 years ago by
lailan.sahrina.hsb • 0
