Codon usage by site

Question

[uirajan-kuki]

Hello,I want to generate a codon usage plot of my sequences,but i want to show it by region in the sequences(because I'm studing a epitope variation over the time).There some tool I can do it grafically?

Thanks a lot!!!

Answer 1

[Kevin Blighe]

You may be interested in —and get ideas from— these:

• Step 05 - Looking at amino acid and codon usage
• Step 10 - Looking at amino acid and codon usage