Question: KisSplice2RefTranscriptome runtime length
0
gravatar for TrentGenomics
11 months ago by
TrentGenomics30 wrote:

Hi,

I'm currently running kissplice2reftranscriptome to predict the impact of SNPs using paired-end reads from 4 samples (8 reads files total, ~45 million bp per file, ~14 gigabytes per file). My 'mergeSNPs.tsv' file is currently ~ 25 megabytes after 24 hrs.

What length of runtime should I be expecting? KisSplice took between 3-4 days to run.

Any info would be great. I feel like I may in for the long-haul! Thanks.

ADD COMMENTlink modified 11 months ago • written 11 months ago by TrentGenomics30
0
gravatar for TrentGenomics
11 months ago by
TrentGenomics30 wrote:

An update:

Finished writing the mainOutput.tsv after ~ 2 days. Still writing the lowQueryCoverageOutput.tsv.

ADD COMMENTlink written 11 months ago by TrentGenomics30
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1147 users visited in the last hour