Question: Fst with p-values
0
gravatar for Simo
21 months ago by
Simo30
Italy
Simo30 wrote:

Hi all,

I've been working with genome-wide data for about 200 samples. I have 150.000 SNPs and I already calculated the Fst using Eigenstrat. I would like to obtain a p-value for each Fst and I tried using Arlequin but it seems to be not able to handle the amount of data. I tried both Windows and Linux versions, without any result. Now I'm working in R with the StAMPP package, and it seems to be working, but the amount of time it requires is huge. Do you have any suggestions? How can I calculate Fst and p-values for my dataset?

Thanks.

pvalue fst genomewide • 1.5k views
ADD COMMENTlink written 21 months ago by Simo30
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1455 users visited in the last hour