Question: dbsnp hg 38
0
gravatar for noeD
10 months ago by
noeD70
noeD70 wrote:

Hello!

I am using GATK -T BaseRecalibrator in my pipeline for whole exon sequencing, and I would like to indicate the -knownSites option, therefore I need the dnsbp file for the hg38. I found at this link https://console.cloud.google.com/storage/browser/genomics-public-data/resources/broad/hg38/v0/ the file "Homo_sapiens_assembly38.dbsnp138.vcf", is it the correct file?

Thank you in advance for your help.

Best

ADD COMMENTlink modified 10 months ago by finswimmer5.3k • written 10 months ago by noeD70
1
gravatar for finswimmer
10 months ago by
finswimmer5.3k
Germany
finswimmer5.3k wrote:

Hello,

I cannot say whether this is a copy of the correct file. I would go to the download page of dbsnp. For human you find the current version here.

fin swimmer

ADD COMMENTlink written 10 months ago by finswimmer5.3k
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