Question: dbsnp hg 38
0
gravatar for noeD
2.7 years ago by
noeD90
noeD90 wrote:

Hello!

I am using GATK -T BaseRecalibrator in my pipeline for whole exon sequencing, and I would like to indicate the -knownSites option, therefore I need the dnsbp file for the hg38. I found at this link https://console.cloud.google.com/storage/browser/genomics-public-data/resources/broad/hg38/v0/ the file "Homo_sapiens_assembly38.dbsnp138.vcf", is it the correct file?

Thank you in advance for your help.

Best

baserecalibrator hg38 gatk dbsnp • 2.1k views
ADD COMMENTlink modified 2.7 years ago by finswimmer13k • written 2.7 years ago by noeD90
1
gravatar for finswimmer
2.7 years ago by
finswimmer13k
Germany
finswimmer13k wrote:

Hello,

I cannot say whether this is a copy of the correct file. I would go to the download page of dbsnp. For human you find the current version here.

fin swimmer

ADD COMMENTlink written 2.7 years ago by finswimmer13k
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