Question: converting vcf to genepop with pgdspider for lositan
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gravatar for jf
16 months ago by
jf0
jf0 wrote:

Hello, I am using the output vcf from tassel uneak as the input vcf for pgdspider. Then I am trying to use pgd spider to convert the file to genepop for lositan to find outlier snps. In pgd spider I am inputting a population definitions file like:

Fe-36 TW_1 Fe-51 TW_1 Fe-76 TW_1

there are 4 populations: TW_1, 2, 3, ad 4. But when I load the file into lositan, it is only recognizing one population.

are there any oversights on my part that could result in that conversion error?

ADD COMMENTlink written 16 months ago by jf0
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