Question: converting vcf to genepop with pgdspider for lositan
gravatar for jf
22 months ago by
jf0 wrote:

Hello, I am using the output vcf from tassel uneak as the input vcf for pgdspider. Then I am trying to use pgd spider to convert the file to genepop for lositan to find outlier snps. In pgd spider I am inputting a population definitions file like:

Fe-36 TW_1 Fe-51 TW_1 Fe-76 TW_1

there are 4 populations: TW_1, 2, 3, ad 4. But when I load the file into lositan, it is only recognizing one population.

are there any oversights on my part that could result in that conversion error?

locitan genepop pgdspider • 1.4k views
ADD COMMENTlink written 22 months ago by jf0
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