Question: Annotation of genomic variants
gravatar for onemoreuser
3.1 years ago by
onemoreuser20 wrote:

Hi, I have a TAB file containing somatic and germline variants from RNA sequencing data. Using tools like: VEP, ANNOVAR or SNPEff, I can annotate the variants but these tools predict the impact variant by variant. They don't consider that different variants interact with each other and one can compensate the other.

Are there tools that predict the impact of variants considering the impact of several variants and not just one on the gene/transcript?

Right now the only tool that I know that predicts something like this is CooVar: Co-occurring variant analyzer. But is there more tools/softwares?


ADD COMMENTlink written 3.1 years ago by onemoreuser20
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1535 users visited in the last hour