Closed:Trinotate missing taxonomy file
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6.4 years ago
Ace ▴ 90

After many bugs encountered, I've made my trinotate database, got it into the webserver and now I'm getting this error:

Error encountered: HTML::Template->new() : Cannot open included file html/taxonomy_best_hit.tmpl : file not found. at /home/$usr/miniconda3/lib/perl5/site_perl/5.22.0/HTML/Template.pm line 1813. HTML::Template::_init_template(HTML::Template=HASH(0x2418a68)) called at /home/$usr/miniconda3/lib/perl5/site_perl/5.22.0/HTML/Template.pm line 1401 HTML::Template::_init(HTML::Template=HASH(0x2418a68)) called at /home/$usr/miniconda3/lib/perl5/site_perl/5.22.0/HTML/Template.pm line 1286 HTML::Template::new("HTML::Template", "filename", "html/taxonomy_best_hit.tmpl") called at /home/$usr/src/Trinotate/TrinotateWeb/cgi-bin/index.cgi line 181 main::TaxonomyBestHit_text(DBI::db=HASH(0x27fde98), "/media/$usr/$drive/RNA-seq/Trinotate"...) called at /home/$usr/src/Trinotate/TrinotateWeb/cgi-bin/index.cgi line 120 main::TrinotateWebMain(HASH(0x2382778), "/media/$usr/$drive/RNA-seq/Trinotate"...) called at /home/$usr/src/Trinotate/TrinotateWeb/cgi-bin/index.cgi line 51 eval {...} called at /home/$usr/src/Trinotate/TrinotateWeb/cgi-bin/index.cgi line 45

When I check the html file in Trinotate it appears there is, in fact, a missing file, but can't seem to find where to obtain a copy of it. Does anyone have experience with this?

Trinotate RNA-Seq Perl Webserver • 360 views
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