Entering edit mode
6.4 years ago
hdtms
▴
20
Hi I'm working with Indels filtered using GATK best practices, I got a vcf, converted to plink and calculated the heterozygosity frequency using plink function --het, I got very low heterozygosity values, compared to SNPs values which which had been calculated before. I am a student and I am still learning about Indels but I assume from what I've read this is normal. Although I can't explain why. Any ideas?
