Question: Research papers or articles to gain knowledge about fastqc tool,fastx toolkit,and cutadapt tool.
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gravatar for dpktiwari168
2.8 years ago by
dpktiwari16830
dpktiwari16830 wrote:

Hello to all, Here i want to know about some articles or research papers that would give me a descriptive information about the FastQC tool,FASTX toolkit and cutadapt tool, as i am using these tools for my project works. please suggest me any article or any research paper so that i can understand these tools in a better way. Regards Deep

sequencing rna-seq next-gen • 780 views
ADD COMMENTlink modified 2.8 years ago by ori50 • written 2.8 years ago by dpktiwari16830
1
gravatar for ori
2.8 years ago by
ori50
ori50 wrote:

FastQC, FASTX toolkit and cutadapt do not execute the algorithm developed taking into consideration biological implications, but are simple tools that evaluate or edit reads from NGS.
I suggest the best way to know how to use is to see manuals of the tools.

Instead, if you want to cite the tools for a paper, please see below.

FastQC
https://scholar.google.co.jp/scholar?hl=ja&as_sdt=0%2C5&q=FastQC%3A+a+quality+control+tool+for+high+throughput+sequence+data&btnG=
(probably they are not papers)

FASTX toolkit
https://scholar.google.co.jp/scholar?hl=ja&as_sdt=0%2C5&q=FASTX+toolkit+&btnG=
(probably they are not papers)

cutadapt
http://cutadapt.readthedocs.io/en/stable/index.html?highlight=cite
( -> If you use cutadapt, please cite DOI:10.14806/ej.17.1.200.)

ADD COMMENTlink written 2.8 years ago by ori50
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