What Blosum matrix to use for ortholog table?
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3.8 years ago
jespinoz ▴ 20

I want to create a protein ortholog table between Arabidopsis thaliana and an algae. I'm wondering what the best blosum matrix to use for this task would be. I'm using blosum50 right now but I'm not sure if there is a more appropriate one for organisms that are this divergent.

genome phylogeny ortholog blosum • 841 views
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