Hello everyone,
i am new to bioinformatics and being a biologist i dont have much knowledge about commands and command based softwares, i have installed Hmmer-3.1b2.cygwin64 on windows 10 by using cygwin. following the steps:
% tar zxf hmmer-3.1b2.cygwinn64.tar.gz
% cd hmmer-3.1b2
% ./configure
% make
% make check
i think No errors were there and all the steps were fine as all check were saying OK , but after installation when for a trial i use the default command (> hmmbuild globins4.hmm tutorial/globins4.sto ) to perform the hmmbuild, the error was showing as command not found, My computer is in Japanese so the command not found error is in Japanese language
Please help me with this HMMER is very important for my research
Thank you in advance
I can't install even I read the instructor. (Same Win10 system with cygwin)
My problem is that once I "./configure", it says :
configure: Configuring HMMER for your system. checking build system type... x86_64-unknown-cygwin checking host system type... x86_64-unknown-cygwin configure: Full HMMER source distribution - using full configuration checking for gcc... no checking for cc... no checking for cl.exe... no configure: error: in
/hmmer-3.1b2-cygwin64': configure: error: no acceptable C compiler found in $PATH See
config.log' for more detailsHow can I fix this?
Please use
unix subsystem for Windows 10
(https://docs.microsoft.com/en-us/windows/wsl/about ) if you want to do this on Windows 10. You will have significantly less trouble. Do you also have enough memory to be able to run HMMER?Thank you "genomax", I can install now by following this () The problem is that I didn't install the some essential functions.
I know it is better to run with unix subsystem for Windows 10, but I am not sure if I can understand how to use it I am new to use this as well...(to this website, too)
BTW, I have 8GB RAM on my computer, is that enough?
Did you not install a compiler for cygwin? This is just the first link that showed up in a search to install
gcc
.