Question: Adding environmental data to ordination in R
gravatar for dannyw2594
2.4 years ago by
dannyw25940 wrote:

Hello Everyone,

I have recently completed an analysis of Illumina 16S amplicon data with Qiime2. I am working in R on the beta-diversity and I'm trying to figure out how to make an NMDS or CCA ordination of my OTU's that accounts for the environmental data. Originally I was working with phyloseq but I am unable to perform this task using it. I know that people use vegan functions like and metaMDS but I'm not really sure what I should be doing. If anyone could point me in the right direction or provide assistance that would be much appreciated.

Cheers, Danny

next-gen R • 701 views
ADD COMMENTlink written 2.4 years ago by dannyw25940
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1894 users visited in the last hour