Converting .bam to .phylip
0
0
Entering edit mode
4.3 years ago
dthorbur ▴ 220

I am undertaking a project aiming to identify genome-wide signals of balancing selection. In doing so I am using the program VariScan to analyse the amount of genetic polymorphism.

To use VariScan I have been suggested to use the .phylip alignment file type. I currently have my data in .sam and .bam file types.

I haven't been able to find any ways of converting .bam to .phylip (apart from a module called bioscripts.convert, but my university analyses servers don't have this module). Are there any intermediary file types I have to convert .bam into first? Or are there ways to directly convert .bam file to .phylip.

Thank you for taking the time to read. Miles

bam phylip • 1.1k views
ADD COMMENT

Login before adding your answer.

Traffic: 1310 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6