Question: (Closed) What tools are proper to preprocess FASTA coming from Velvet assembler into the Prokka, BG7 and RAST annotators?
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gravatar for hockeytoronto2018
3.1 years ago by
hockeytoronto20180 wrote:

What tools are proper to preprocess FASTA coming from Velvet assembler into the Prokka, BG7 and RAST annotators?

I recieve duplication error with Prokka when submitting raw Velvet output. I have tried FASTX-TOOLKIT and no help. Need a Linux software tools to make FASTA digestable to Prokka.

ADD COMMENTlink written 3.1 years ago by hockeytoronto20180

What do you mean with duplication error? Duplicate sequences? Duplicate sequence ids?

ADD REPLYlink written 3.1 years ago by cschu1812.6k

Hello hockeytoronto2018!

We believe that this post does not fit the main topic of this site.

Not a real question

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD REPLYlink written 3.1 years ago by Michael Dondrup48k
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