Individual chromosome SNP VCF
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6.5 years ago
win ▴ 990

Hi all, i am looking for hg38 dbSNP VCF file but for each chromosome separately. I am unable to download the entire genome VCF file hence i need a smaller individual VCF file for testing and development.

Any help is highly appreciated.

NGS • 1.4k views
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6.5 years ago
Vivek ★ 2.7k

You could download a subset with tabix for the regions you need.

tabix -h ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/00-All.vcf.gz '2:39967768-39967768' > dbsnp_2_39967768_39967768.vcf
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