I am trying to find similar and non-similar genes by analyzing whole genomes of 147 strains. I am using BPGA-Version-1.3. The problem which I am facing is that in some of the genebank files it gives the error "There were errors in the file:(filename). I even tried up upload the fasta file of the same strain to RAST server and download.gb file after annotation. But BPGA gives same error with that file also.
Here is the link to the image showing the error which I am facing
Is there any way to fix this error or to fix my genebank files with a software or manually.