Question: Which tool is best for Annotation of human vcf files (Snpeff or VEP or Annovar) ?
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gravatar for kirti.amity
13 months ago by
kirti.amity0 wrote:

Which tool is best for Annotation of human vcf files from (Snpeff or VEP or Annovar) ?

sequencing • 525 views
ADD COMMENTlink modified 13 months ago by JJ430 • written 13 months ago by kirti.amity0
1
gravatar for Macspider
13 months ago by
Macspider2.8k
Vienna - BOKU
Macspider2.8k wrote:

I don't think that there is a better tool, it all comes down to what you need. I used SnpEff and found it really nice and working, but others might say the same for Annovar or VEP.

ADD COMMENTlink written 13 months ago by Macspider2.8k
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gravatar for JJ
13 months ago by
JJ430
JJ430 wrote:

I also like snpEff as it can annotate structural variants as well - and it produces a nice report!

ADD COMMENTlink modified 13 months ago • written 13 months ago by JJ430
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