Question: Which tool is best for Annotation of human vcf files (Snpeff or VEP or Annovar) ?
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gravatar for kirti.amity
20 months ago by
kirti.amity0 wrote:

Which tool is best for Annotation of human vcf files from (Snpeff or VEP or Annovar) ?

sequencing • 829 views
ADD COMMENTlink modified 20 months ago by JJ470 • written 20 months ago by kirti.amity0
1
gravatar for Macspider
20 months ago by
Macspider3.0k
Vienna - BOKU
Macspider3.0k wrote:

I don't think that there is a better tool, it all comes down to what you need. I used SnpEff and found it really nice and working, but others might say the same for Annovar or VEP.

ADD COMMENTlink written 20 months ago by Macspider3.0k
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gravatar for JJ
20 months ago by
JJ470
JJ470 wrote:

I also like snpEff as it can annotate structural variants as well - and it produces a nice report!

ADD COMMENTlink modified 20 months ago • written 20 months ago by JJ470
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