Question: Uploaded variation '0' in ensembl vep output.
0
gravatar for sv91707
15 months ago by
sv9170710
Tampere
sv9170710 wrote:

I'm annotating variants for zebrafish using latest version of ensembl vep and cache version 91. The VCF file format is v4.1

VEP is writing in uploaded variation column '.' or '0' in output file.

Is there a bug ? or anyway to switch to old format of '11_224088_C/A' for example ?

My input command options in addition to input and output file are : --merged --tab --sift b --buffer_size 10000 --cache --offline -symbol --fork 20 --check_existing --total_length --numbers --species danio_rerio --chr 9 --force_overwrite

ensembl vep • 321 views
ADD COMMENTlink written 15 months ago by sv9170710
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1811 users visited in the last hour