Uploaded variation '0' in ensembl vep output.
0
0
Entering edit mode
6.2 years ago
sv91707 ▴ 10

I'm annotating variants for zebrafish using latest version of ensembl vep and cache version 91. The VCF file format is v4.1

VEP is writing in uploaded variation column '.' or '0' in output file.

Is there a bug ? or anyway to switch to old format of '11_224088_C/A' for example ?

My input command options in addition to input and output file are : --merged --tab --sift b --buffer_size 10000 --cache --offline -symbol --fork 20 --check_existing --total_length --numbers --species danio_rerio --chr 9 --force_overwrite

ensembl vep • 1.2k views
ADD COMMENT

Login before adding your answer.

Traffic: 2252 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6