Question: MACS2: What is in 4th column of treat_pvalue.bdg/treat_qvalue.bdg files?
gravatar for salamandra
21 days ago by
salamandra110 wrote:

MACS2 output files, 'treat_pvalue.bdg' and 'treat_qvalue.bdg', contain only significant peaks (with p-value/q-value below user defined threshold).

But is 4th column of these files the difference in intensity (score) between ChIP and Input, or is it intensity (score) for ChIP only?

If it is the intensity for ChIP only, then what tools can get the difference between ChIP and Input intensities?

chip-seq macs2 • 102 views
ADD COMMENTlink modified 20 days ago • written 21 days ago by salamandra110
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