Question: GDC data for mutation comparison between GBM and LGG using R
0
gravatar for lawarde.ankita1
20 months ago by
lawarde.ankita150 wrote:

Hello sir/ madam,

I am using GBM and LGG tumors data from GCD, I have refereed to the TCGAworlflow, TCGAbiolink packages. I want to compare the mutations between GBM and LGG tumor data. I know maftools is for the mutation analysis. I was following this tutorial (https://www.bioconductor.org/help/workflows/TCGAWorkflow/) where it combines the mutation information of GBM and LGG data and then it gives the summary plot of mutations using maftools.

So my question is,

  1. is there a way to compare the mutations between two datasets, here for example: GBM and LGG ?
  2. and if there is a way to do such comparison, then can anyone explain me this with a sample R code?

Any suggestions would be very helpful.

Thank you so much.

ADD COMMENTlink written 20 months ago by lawarde.ankita150
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1876 users visited in the last hour