Tool to determine percentage of transcripts that have the intron cleaved from RNA-seq data
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3.5 years ago
kamula ▴ 10

I'm interested in analyzing the splicing of a transcript that has two exons.

Is there a tool that will provide the percentage of transcripts that have the intron removed, vs. transcripts with the intron still present?

I'd imaging it would quantify the percentage of reads that either span the intron, or don't.

RNA-Seq • 652 views
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