Hello everyone, I need to build a protein-protein interaction network (Mus musculus) with costs. Actually I will use this interaction network for PCSF package of R.
I checked STRING data base. I downloaded Mus musculus data and it has a combined score column. Is it same with cost? Also all protein names have ENSEMBL ID. I need Protein names (GeneSymbol) for node names.
Where can I download this type of network?
P.S: Is there a way to calculate cost from topology of a network? I think costs are experimental values but I thought there has to be a way to calculate it.