Question: Availability of Broad Institute BRD perturbagen identifier mappings?
gravatar for sam237337
2.4 years ago by
sam23733770 wrote:

I have a dataset that includes identifiers from the Broad Institute of the format BRD-{9-valued alphanumeric string}, where each ID specifies a perturbagen. I'm trying to locate a master list of the definitions/names of these BRD IDs, specifying how they map to other platforms such as PubChem and ChEMBL. It would also be ideal to have a prose name for each BRD ID.

I've searched the Broad Institute's site for this info, but have not located what I need. Searching for individual BRD IDs on their appropriate page returns no results. So far, I haven't received a response to my inquiry to that institution regarding whether such a list of BRD ID mappings exists. I have a file from the LINCS project that contains many of these mappings, but I'm looking to fill in the gaps in that data with a more comprehensive list, if it exists.

Does anyone know whether such a mapping file/site for these BRD IDs exists? Thanks in advance for your input.

identifiers mappings • 1.3k views
ADD COMMENTlink written 2.4 years ago by sam23733770

Update: This solution doesn't directly address the question I originally posed, but I did find that the LINCS Small Molecules Catalog site contains the mappings between LINCS LSM ID values (which are also included in my dataset) and drug names, so that I ultimately didn't need the mappings for the BRD IDs.

ADD REPLYlink written 2.4 years ago by sam23733770
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1106 users visited in the last hour