Question: question about 10x genomics output: filtered_gene_bc_matrices versus raw_gene_bc_matrices
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gravatar for just3.just5
2.2 years ago by
just3.just50 wrote:

Hi

I am newbie in single cell RNA-seq. I have ouput of 10x genomics. I wonder what the difference is between

"filtered_gene_bc_matrices" and "raw_gene_bc_matrices"?

Thanks

rna-seq • 1.0k views
ADD COMMENTlink modified 2.2 years ago by dppb0590 • written 2.2 years ago by just3.just50
1
gravatar for dppb05
2.2 years ago by
dppb0590
dppb0590 wrote:

According to the 10X documentation:

  • raw_gene_bc_matrices: Contains every barcode from fixed list of known-good barcode sequences. This includes background and non-cellular barcodes.
  • filtered_gene_bc_matrices: Contains only detected cellular barcodes.
ADD COMMENTlink modified 2.2 years ago • written 2.2 years ago by dppb0590
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